Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08895

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 291

Length: 486
ACGTcount: A:0.32, C:0.27, G:0.25, T:0.15


Found at i:52 original size:30 final size:30

Alignment explanation


    Indices: 16--92  Score: 118
    Period size: 30  Copynumber: 2.6  Consensus size: 30

          6 TGATTTGAGA

                             *            
         16 GACGAACACGGCAACCCTATTCAACTCACC
          1 GACGAACACGGCAACCCGATTCAACTCACC

                              *          *
         46 GACGAACACGGCAACCCGGTTCAACTCACT
          1 GACGAACACGGCAACCCGATTCAACTCACC

                       *     
         76 GACGAACACGGTAACCC
          1 GACGAACACGGCAACCC

         93 CATTTATGTC


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  30   43  1.00

ACGTcount: A:0.32, C:0.38, G:0.18, T:0.12


Consensus pattern (30 bp):   
GACGAACACGGCAACCCGATTCAACTCACC
Done.