Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24901

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2694
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28


Found at i:1192 original size:12 final size:12

Alignment explanation


    Indices: 1177--1201  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1167 GTCAATATTT

                        
       1177 TCTACTCCTAAC
          1 TCTACTCCTAAC

                        
       1189 TCTACTCCTAAC
          1 TCTACTCCTAAC

             
       1201 T
          1 T

       1202 TTGTATCACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.40, G:0.00, T:0.36


Consensus pattern (12 bp):   
TCTACTCCTAAC
Done.