Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19581

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 761

Length: 1269
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28


Found at i:1237 original size:37 final size:37

Alignment explanation


    Indices: 1196--1269  Score: 139
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1186 AAGGATGGCC

                            *                    
       1196 AAAAGGAGGAACTAGTTGCAGTTTCTTACCTTGCTAA
          1 AAAAGGAGGAACTAGTCGCAGTTTCTTACCTTGCTAA

                                                 
       1233 AAAAGGAGGAACTAGTCGCAGTTTCTTACCTTGCTAA
          1 AAAAGGAGGAACTAGTCGCAGTTTCTTACCTTGCTAA


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  37   36  1.00

ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28


Consensus pattern (37 bp):   
AAAAGGAGGAACTAGTCGCAGTTTCTTACCTTGCTAA
Done.