Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00695

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5174
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24


Found at i:4937 original size:6 final size:6

Alignment explanation


    Indices: 4926--4956  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       4916 CATGTGGGGA

                                                
       4926 GGAGCC GGAGCC GGAGCC GGAGCC GGAGCC G
          1 GGAGCC GGAGCC GGAGCC GGAGCC GGAGCC G

       4957 AACCAAATCA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.16, C:0.32, G:0.52, T:0.00


Consensus pattern (6 bp):   
GGAGCC

Done.