Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19465

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29


Found at i:388 original size:3 final size:3

Alignment explanation


    Indices: 380--413  Score: 59
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        370 GGAAGTGAAT

                         *                               
        380 ATG ATG ATG AGG ATG ATG ATG ATG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A

        414 AAAAGAAGAA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29


Consensus pattern (3 bp):   
ATG

Done.