Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04708

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 585

Length: 975
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25


Found at i:72 original size:21 final size:21

Alignment explanation


    Indices: 33--72  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

         23 TGGAGACATA

                          *      
         33 CAAGACCCTCTTCACCAACTC
          1 CAAGACCCTCTTCAACAACTC

                                
         54 CAAGA-CCTCTTCCAACAAC
          1 CAAGACCCTCTT-CAACAAC

         73 CACGACCACC


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    6  0.35
  21   11  0.65

ACGTcount: A:0.33, C:0.45, G:0.05, T:0.17


Consensus pattern (21 bp):   
CAAGACCCTCTTCAACAACTC
Done.