Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17910

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 220

Length: 367
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30


Found at i:256 original size:138 final size:138

Alignment explanation


    Indices: 8--277  Score: 513
    Period size: 138  Copynumber: 2.0  Consensus size: 138

          1 GTGCAAA

                 *                                                           
          8 GTGGATTCCTTCTGGATGTTGTAATCTGCAAGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAA
          1 GTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAA

                                 *  *                                        
         73 AATCAGCCTCTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTATCAA
         66 AATCAGCCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTATCAA

                    
        138 TCTGGAGG
        131 TCTGGAGG

                                                                             
        146 GTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAA
          1 GTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAA

                                                                             
        211 AATCAGCCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTATCAA
         66 AATCAGCCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTATCAA

              
        276 TC
        131 TC

        278 GTGTCTGAGC


Statistics
Matches: 129,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 138  129  1.00

ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33


Consensus pattern (138 bp):   
GTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTCCTCCCATCTTCAAGTTGCTTCCCAGCAAA
AATCAGCCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTATCAA
TCTGGAGG
Done.