Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25654

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2196
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27


Found at i:697 original size:21 final size:21

Alignment explanation


    Indices: 630--690  Score: 95
    Period size: 21  Copynumber: 2.9  Consensus size: 21

        620 TAGGAGAGTA

                             *   
        630 TGGTGGTCCTGGTGGTGCTGC
          1 TGGTGGTCCTGGTGGTGGTGC

                  *       *      
        651 TGGTGGCCCTGGTGTTGGTGC
          1 TGGTGGTCCTGGTGGTGGTGC

                               
        672 TGGTGGTCCTGGTGGTGGT
          1 TGGTGGTCCTGGTGGTGGT

        691 CTTGGTGAGG


Statistics
Matches: 35,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   35  1.00

ACGTcount: A:0.00, C:0.16, G:0.49, T:0.34


Consensus pattern (21 bp):   
TGGTGGTCCTGGTGGTGGTGC
Done.