Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14794

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2234
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27


Found at i:1973 original size:18 final size:17

Alignment explanation


    Indices: 1950--1989  Score: 71
    Period size: 18  Copynumber: 2.3  Consensus size: 17

       1940 TTATGGCAAA

                             
       1950 TTTTCTAGCAGGGATCG
          1 TTTTCTAGCAGGGATCG

                              
       1967 CTTTTCTAGCAGGGATCG
          1 -TTTTCTAGCAGGGATCG

                 
       1985 TTTTC
          1 TTTTC

       1990 CACGAGGCGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  17    5  0.23
  18   17  0.77

ACGTcount: A:0.15, C:0.20, G:0.25, T:0.40


Consensus pattern (17 bp):   
TTTTCTAGCAGGGATCG
Done.