Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04907

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3057
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:506 original size:24 final size:24

Alignment explanation


    Indices: 477--524  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        467 GCGTGTCTTC

                           *        
        477 CAAGGAAGAGAAAGATAAATCATT
          1 CAAGGAAGAGAAAGAGAAATCATT

                                    
        501 CAAGGAAGAGAAAGAGAAATCATT
          1 CAAGGAAGAGAAAGAGAAATCATT

        525 ATCACAAAAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.54, C:0.08, G:0.23, T:0.15


Consensus pattern (24 bp):   
CAAGGAAGAGAAAGAGAAATCATT
Done.