Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06570

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1704
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27


Found at i:43 original size:15 final size:15

Alignment explanation


    Indices: 20--50  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

         10 CAAATATTAG

                *          
         20 CATCTTCTTCTTCTT
          1 CATCATCTTCTTCTT

                           
         35 CATCATCTTCTTCTT
          1 CATCATCTTCTTCTT

             
         50 C
          1 C

         51 GGCTGTTGCT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.10, C:0.35, G:0.00, T:0.55


Consensus pattern (15 bp):   
CATCATCTTCTTCTT
Done.