Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06088

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 401

Length: 669
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28


Found at i:614 original size:9 final size:9

Alignment explanation


    Indices: 600--625  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        590 CTATTTTCAA

                     
        600 CCCAAAAGT
          1 CCCAAAAGT

                     
        609 CCCAAAAGT
          1 CCCAAAAGT

                    
        618 CCCAAAAG
          1 CCCAAAAG

        626 ACGAAAATGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.46, C:0.35, G:0.12, T:0.08


Consensus pattern (9 bp):   
CCCAAAAGT
Done.