Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04617

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 899

Length: 1499
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27


Found at i:1363 original size:9 final size:9

Alignment explanation


    Indices: 1351--1382  Score: 55
    Period size: 9  Copynumber: 3.6  Consensus size: 9

       1341 GAGGAAAAAG

                     
       1351 AGAAGCAGA
          1 AGAAGCAGA

                     
       1360 AGAAGCAGA
          1 AGAAGCAGA

                *    
       1369 AGAAACAGA
          1 AGAAGCAGA

                 
       1378 AGAAG
          1 AGAAG

       1383 AGAGATTCAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.59, C:0.09, G:0.31, T:0.00


Consensus pattern (9 bp):   
AGAAGCAGA
Done.