Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25680

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4035
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29


Found at i:1972 original size:16 final size:16

Alignment explanation


    Indices: 1951--1983  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1941 GTTTAAGAAA

                             
       1951 TGTCTCA-AAGGACTGT
          1 TGTCTCAGAA-GACTGT

                            
       1967 TGTCTCAGAAGACTGT
          1 TGTCTCAGAAGACTGT

             
       1983 T
          1 T

       1984 ATTTATGCTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16   14  0.88
  17    2  0.12

ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33


Consensus pattern (16 bp):   
TGTCTCAGAAGACTGT
Done.