Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34778

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1367
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:177 original size:3 final size:3

Alignment explanation


    Indices: 165--200  Score: 65
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        155 CTAACCAAAA

                                                             
        165 CTT C-T CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C

        201 CTCAGTAATG


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2    2  0.06
   3   30  0.94

ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64


Consensus pattern (3 bp):   
CTT

Done.