Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14977

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23


Found at i:345 original size:3 final size:3

Alignment explanation


    Indices: 312--355  Score: 52
    Period size: 3  Copynumber: 14.7  Consensus size: 3

        302 AAGCTGAGAA

                    *       *       *       *                         
        312 TCC TCC ACC TCC ACC TCC ACC TCC GCC TCC TCC TCC TCC TCC TC
          1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC

        356 ATCATCATAG


Statistics
Matches: 33,  Mismatches: 8, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.07, C:0.66, G:0.02, T:0.25


Consensus pattern (3 bp):   
TCC

Done.