Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31196

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 253

Length: 423
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27


Found at i:127 original size:3 final size:3

Alignment explanation


    Indices: 119--150  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        109 TCCTTCCCCA

                                                      
        119 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
          1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT

        151 GATATTGATC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34


Consensus pattern (3 bp):   
ATC

Done.