Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00887

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1686
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29


Found at i:1363 original size:36 final size:36

Alignment explanation


    Indices: 1323--1391  Score: 120
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       1313 TGCGTCGATG

                                        *       
       1323 CCCTCCTGGTGGATCTCCCACTTACAGCTCTGGATA
          1 CCCTCCTGGTGGATCTCCCACTTACAGCACTGGATA

                                   *         
       1359 CCCTCCTGGTGGATCTCCCACTTTCAGCACTGG
          1 CCCTCCTGGTGGATCTCCCACTTACAGCACTGG

       1392 GAGCCAGTCT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   31  1.00

ACGTcount: A:0.14, C:0.38, G:0.20, T:0.28


Consensus pattern (36 bp):   
CCCTCCTGGTGGATCTCCCACTTACAGCACTGGATA
Done.