Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13005

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4302
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27


Found at i:2142 original size:39 final size:39

Alignment explanation


    Indices: 2083--2162  Score: 142
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       2073 ATCTGTGCCT

                *                                  
       2083 AAATGTGAGGGAGAAGTTAATGTGGCAACTGATTCTTCA
          1 AAATCTGAGGGAGAAGTTAATGTGGCAACTGATTCTTCA

                          *                        
       2122 AAATCTGAGGGAGAGGTTAATGTGGCAACTGATTCTTCA
          1 AAATCTGAGGGAGAAGTTAATGTGGCAACTGATTCTTCA

              
       2161 AA
          1 AA

       2163 GGCTGCTGTT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.34, C:0.11, G:0.28, T:0.28


Consensus pattern (39 bp):   
AAATCTGAGGGAGAAGTTAATGTGGCAACTGATTCTTCA
Done.