Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06929

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 743

Length: 1239
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26


Found at i:486 original size:6 final size:6

Alignment explanation


    Indices: 475--504  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        465 TCAGGTTCCC

                                              
        475 ACATAT ACATAT ACATAT ACATAT ACATAT
          1 ACATAT ACATAT ACATAT ACATAT ACATAT

        505 TTGTATGGTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33


Consensus pattern (6 bp):   
ACATAT

Done.