Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02366

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 961

Length: 1602
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26


Found at i:610 original size:24 final size:24

Alignment explanation


    Indices: 583--631  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        573 TTCGGTGGAA

                                    
        583 GGAGGAGCCGGAAAAGTTCCCGAC
          1 GGAGGAGCCGGAAAAGTTCCCGAC

                                    
        607 GGAGGAGCCGGAAAAGTTCCCGAC
          1 GGAGGAGCCGGAAAAGTTCCCGAC

             
        631 G
          1 G

        632 AAACTCGGCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.29, C:0.24, G:0.39, T:0.08


Consensus pattern (24 bp):   
GGAGGAGCCGGAAAAGTTCCCGAC
Done.