Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07956

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2412
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23


Found at i:178 original size:30 final size:30

Alignment explanation


    Indices: 142--221  Score: 160
    Period size: 30  Copynumber: 2.7  Consensus size: 30

        132 TAATAGCCCG

                                          
        142 ACTGGAAATGAGCAAGATGGCTCTAACCGT
          1 ACTGGAAATGAGCAAGATGGCTCTAACCGT

                                          
        172 ACTGGAAATGAGCAAGATGGCTCTAACCGT
          1 ACTGGAAATGAGCAAGATGGCTCTAACCGT

                                
        202 ACTGGAAATGAGCAAGATGG
          1 ACTGGAAATGAGCAAGATGG

        222 GACCAACAAA


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   50  1.00

ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19


Consensus pattern (30 bp):   
ACTGGAAATGAGCAAGATGGCTCTAACCGT
Done.