Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16053

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 207

Length: 345
ACGTcount: A:0.21, C:0.14, G:0.40, T:0.24


Found at i:143 original size:18 final size:19

Alignment explanation


    Indices: 98--143  Score: 51
    Period size: 21  Copynumber: 2.4  Consensus size: 19

         88 GGAGAAGGAC

                                
         98 CCATTGATGGCGGTGGTGAA
          1 CCATTGATGGCGGTGGTG-A

                                 
        118 CTCATTGATGG-GGTTGGTG-
          1 C-CATTGATGGCGG-TGGTGA

                   
        137 CCATTGA
          1 CCATTGA

        144 AGAAGGGGTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 6
        0.80            0.00        0.20

Matches are distributed among these distances:
  18    6  0.25
  19    1  0.04
  20    3  0.12
  21   14  0.58

ACGTcount: A:0.17, C:0.15, G:0.37, T:0.30


Consensus pattern (19 bp):   
CCATTGATGGCGGTGGTGA
Done.