Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25328

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4233
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30


Found at i:2838 original size:33 final size:33

Alignment explanation


    Indices: 2796--2861  Score: 132
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       2786 ACTTGCCACC

                                             
       2796 ATTGAGAAAAGTCTCTCTTTCAAATGTTTCAAA
          1 ATTGAGAAAAGTCTCTCTTTCAAATGTTTCAAA

                                             
       2829 ATTGAGAAAAGTCTCTCTTTCAAATGTTTCAAA
          1 ATTGAGAAAAGTCTCTCTTTCAAATGTTTCAAA

       2862 GTTTTCTCCC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36


Consensus pattern (33 bp):   
ATTGAGAAAAGTCTCTCTTTCAAATGTTTCAAA
Done.