Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09280

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23


Found at i:690 original size:18 final size:18

Alignment explanation


    Indices: 667--701  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        657 ATGCAATGGC

                       *      
        667 AGCATGGTGAATGGTGGT
          1 AGCATGGTGAACGGTGGT

                             
        685 AGCATGGTGAACGGTGG
          1 AGCATGGTGAACGGTGG

        702 CTCTGTATGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.23, C:0.09, G:0.46, T:0.23


Consensus pattern (18 bp):   
AGCATGGTGAACGGTGGT
Done.