Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18424

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 532

Length: 888
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30


Found at i:59 original size:3 final size:3

Alignment explanation


    Indices: 51--83  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

         41 TAATTAGTAT

                                                       
         51 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

         84 AAAAGCTTCA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTC

Done.