Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05679

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 401

Length: 669
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28


Found at i:445 original size:93 final size:93

Alignment explanation


    Indices: 286--475  Score: 326
    Period size: 93  Copynumber: 2.0  Consensus size: 93

        276 AGCCGCCGCA

                       *                 *                                   
        286 GCGAGGTTCGCGAACTCGGAGCCTTCGACTATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
          1 GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT

               *                        
        351 GGAGTCACCGTCGCCGTCAGTTTCGGAC
         66 GGAATCACCGTCGCCGTCAGTTTCGGAC

                    *       *                                                
        379 GCGAGGTTTGCAAACTTGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
          1 GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT

                                     *  
        444 GGAATCACCGTCGCCGTCAGTTTCGTAC
         66 GGAATCACCGTCGCCGTCAGTTTCGGAC

                
        472 GCGA
          1 GCGA

        476 CGGTACAATT


Statistics
Matches: 91,  Mismatches: 6, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  93   91  1.00

ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24


Consensus pattern (93 bp):   
GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
GGAATCACCGTCGCCGTCAGTTTCGGAC
Done.