Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12454

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 523

Length: 873
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31


Found at i:763 original size:12 final size:12

Alignment explanation


    Indices: 746--770  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        736 CTAACAGCCC

                        
        746 CAGTATTAGGAG
          1 CAGTATTAGGAG

                        
        758 CAGTATTAGGAG
          1 CAGTATTAGGAG

             
        770 C
          1 C

        771 CCTGATGTAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24


Consensus pattern (12 bp):   
CAGTATTAGGAG
Done.