Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32741

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1037
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:540 original size:12 final size:12

Alignment explanation


    Indices: 525--557  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        515 GGCTGTTGCT

                        
        525 GCTGCTGCTGCA
          1 GCTGCTGCTGCA

                        
        537 GCTGCTGCTGCA
          1 GCTGCTGCTGCA

               *     
        549 GCTACTGCT
          1 GCTGCTGCT

        558 TCCTCCGATA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.09, C:0.33, G:0.30, T:0.27


Consensus pattern (12 bp):   
GCTGCTGCTGCA
Done.