Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15850

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 343

Length: 573
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33


Found at i:453 original size:240 final size:241

Alignment explanation


    Indices: 30--511  Score: 885
    Period size: 240  Copynumber: 2.0  Consensus size: 241

         20 CATCGTTAAG

                      *     *                                      *         
         30 GATTAACAACGACAGCGTCACTAGTTTCAGCTTTCTGATGGGTGTATTCCTAGCTGTCATGAACC
          1 GATTAACAACAACAGCATCACTAGTTTCAGCTTTCTGATGGGTGTATTCCTAGCTCTCATGAACC

                *     *            *                                         
         95 TCAATTTCCATCCCCAGCGTAATTTTGAATCTCCGTTTGAGACCCAAGGTGTGGTCATGCCCATG
         66 TCAAATTCCAACCCCAGCGTAATATTGAATCTCCGTTTGAGACCCAAGGTGTGGTCATGCCCATG

                                                                          *  
        160 TTCGTCATCTGTATGCTCGTCTACTCCATAACTTTCTGCACTCCCTACTTCCCTGAAGTTATGGA
        131 TTCGTCATCTGTATGCTCGTCTACTCCATAACTTTCTGCACTCCCTACTTCCCTGAAGTTATCGA

                    *                                     
        225 TCACATCAGCCTCCTAGCCGGAAGTCTTGCCACGG-TTTTACTTAC
        196 TCACATCAACCTCCTAGCCGGAAGTCTTGCCACGGTTTTTACTTAC

                                                                             
        270 GATTAACAACAACAGCATCACTAGTTTCAGCTTTCTGATGGGTGTATTCCTAGCTCTCATGAACC
          1 GATTAACAACAACAGCATCACTAGTTTCAGCTTTCTGATGGGTGTATTCCTAGCTCTCATGAACC

                                                                             
        335 TCAAATTCCAACCCCAGCGTAATATTGAATCTCCGTTTGAGACCCAAGGTGTGGTCATGCCCATG
         66 TCAAATTCCAACCCCAGCGTAATATTGAATCTCCGTTTGAGACCCAAGGTGTGGTCATGCCCATG

                                                                             
        400 TTCGTCATCTGTATGCTCGTCTACTCCATAACTTTCTGCACTCCCTACTTCCCTGAAGTTATCGA
        131 TTCGTCATCTGTATGCTCGTCTACTCCATAACTTTCTGCACTCCCTACTTCCCTGAAGTTATCGA

                                                          
        465 TCACATCAACCTCCTAGCCGGAAGTCTTGCCACGGTTTTTACTTAC
        196 TCACATCAACCTCCTAGCCGGAAGTCTTGCCACGGTTTTTACTTAC

             
        511 G
          1 G

        512 TTTATCCTTT


Statistics
Matches: 233,  Mismatches: 8, Indels: 1
        0.96            0.03        0.00

Matches are distributed among these distances:
 240  222  0.95
 241   11  0.05

ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32


Consensus pattern (241 bp):   
GATTAACAACAACAGCATCACTAGTTTCAGCTTTCTGATGGGTGTATTCCTAGCTCTCATGAACC
TCAAATTCCAACCCCAGCGTAATATTGAATCTCCGTTTGAGACCCAAGGTGTGGTCATGCCCATG
TTCGTCATCTGTATGCTCGTCTACTCCATAACTTTCTGCACTCCCTACTTCCCTGAAGTTATCGA
TCACATCAACCTCCTAGCCGGAAGTCTTGCCACGGTTTTTACTTAC
Done.