Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27335

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2214
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30


Found at i:858 original size:15 final size:15

Alignment explanation


    Indices: 838--866  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        828 AAGTTTTGGT

                           
        838 CTTTTGTCTCAGCAG
          1 CTTTTGTCTCAGCAG

                          
        853 CTTTTGTCTCAGCA
          1 CTTTTGTCTCAGCA

        867 ACCAAGCGTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41


Consensus pattern (15 bp):   
CTTTTGTCTCAGCAG
Done.