Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38921

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 291

Length: 486
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24


Found at i:421 original size:23 final size:24

Alignment explanation


    Indices: 386--430  Score: 56
    Period size: 23  Copynumber: 1.9  Consensus size: 24

        376 GAGAAAGAGA

                             *      
        386 GACAAGAAAAGG-AGAAGGAACAT
          1 GACAAGAAAAGGAAGAAAGAACAT

                  * *             
        409 GACAAGGATAGGAAGAAAGAAC
          1 GACAAGAAAAGGAAGAAAGAAC

        431 TTGCTGATAC


Statistics
Matches: 18,  Mismatches: 3, Indels: 1
        0.82            0.14        0.05

Matches are distributed among these distances:
  23   10  0.56
  24    8  0.44

ACGTcount: A:0.56, C:0.09, G:0.31, T:0.04


Consensus pattern (24 bp):   
GACAAGAAAAGGAAGAAAGAACAT
Done.