Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38748

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 459

Length: 765
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:606 original size:12 final size:12

Alignment explanation


    Indices: 585--614  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        575 CGTTTTGTAA

                        
        585 TTCTTCATCGTC
          1 TTCTTCATCGTC

                 *      
        597 TTCTTTATCGTC
          1 TTCTTCATCGTC

                  
        609 TTCTTC
          1 TTCTTC

        615 TTGTTATGAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.07, C:0.30, G:0.07, T:0.57


Consensus pattern (12 bp):   
TTCTTCATCGTC
Done.