Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13821

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3807
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27


Found at i:1198 original size:24 final size:24

Alignment explanation


    Indices: 1123--1198  Score: 71
    Period size: 24  Copynumber: 3.2  Consensus size: 24

       1113 GACGACTCCG

                *          **      *
       1123 AGGAAACCAAGTGTGGGAAATCCG
          1 AGGAGACCAAGTGTGAAAAATCCA

              *   *  *        *    *
       1147 AGCAGATCAGGTGTGAAATATCCC
          1 AGGAGACCAAGTGTGAAAAATCCA

                                    
       1171 AGGAGACCAAGTGTGAAAAATCCA
          1 AGGAGACCAAGTGTGAAAAATCCA

                
       1195 AGGA
          1 AGGA

       1199 AAGATGAAAA


Statistics
Matches: 39,  Mismatches: 13, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
  24   39  1.00

ACGTcount: A:0.39, C:0.17, G:0.29, T:0.14


Consensus pattern (24 bp):   
AGGAGACCAAGTGTGAAAAATCCA
Done.