Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20940

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.32


Found at i:684 original size:42 final size:42

Alignment explanation


    Indices: 637--725  Score: 169
    Period size: 42  Copynumber: 2.1  Consensus size: 42

        627 TTATGAGGAA

                                                   *  
        637 GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACGTTG
          1 GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACGGTG

                                                      
        679 GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACGGTG
          1 GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACGGTG

                 
        721 GTTGA
          1 GTTGA

        726 TTCGGAGTGT


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   46  1.00

ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30


Consensus pattern (42 bp):   
GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACGGTG
Done.