Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18890

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 315

Length: 525
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25


Found at i:63 original size:21 final size:20

Alignment explanation


    Indices: 39--77  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 20

         29 TGGTGGTATC

                *                
         39 AGCACCATCACCAGAAACTCA
          1 AGCAACATCACCA-AAACTCA

                      *       
         60 AGCAACATCAGCAAAACT
          1 AGCAACATCACCAAAACT

         78 TGCTGCACAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    5  0.31
  21   11  0.69

ACGTcount: A:0.46, C:0.33, G:0.10, T:0.10


Consensus pattern (20 bp):   
AGCAACATCACCAAAACTCA
Done.