Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40508

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 876

Length: 1461
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23


Found at i:259 original size:3 final size:3

Alignment explanation


    Indices: 253--292  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

        243 TAGCAAAGAA

                                                                 
        253 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G

        293 GGAAACATGG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.33, C:0.00, G:0.35, T:0.33


Consensus pattern (3 bp):   
GAT

Done.