Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01205

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1777
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:990 original size:29 final size:29

Alignment explanation


    Indices: 945--1000  Score: 94
    Period size: 29  Copynumber: 1.9  Consensus size: 29

        935 CTACAAATGA

                 *                       
        945 TGTTTTAACTCTATAGTTATTCAGGATTG
          1 TGTTTAAACTCTATAGTTATTCAGGATTG

                        *              
        974 TGTTTAAACTCTGTAGTTATTCAGGAT
          1 TGTTTAAACTCTATAGTTATTCAGGAT

       1001 AACCAATTGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   25  1.00

ACGTcount: A:0.25, C:0.11, G:0.18, T:0.46


Consensus pattern (29 bp):   
TGTTTAAACTCTATAGTTATTCAGGATTG
Done.