Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12874

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3225
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28


Found at i:469 original size:30 final size:30

Alignment explanation


    Indices: 286--471  Score: 291
    Period size: 30  Copynumber: 6.2  Consensus size: 30

        276 AGTTAGGCCA

                         *                
        286 TTTGGGCCACCAAATGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

               *  *    *                  
        316 TTTCGGTCACCCAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

               * **                       
        346 TTTCGTTCACCAAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

                       *                  
        376 TTTGGGCCACCGAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

               *                          
        406 TTTCGGCCACCAAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

                                          
        436 TTTGGGCCACCAAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

                  
        466 TTTGGG
          1 TTTGGG

        472 ACTAGACCAC


Statistics
Matches: 143,  Mismatches: 13, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  30  143  1.00

ACGTcount: A:0.12, C:0.37, G:0.25, T:0.26


Consensus pattern (30 bp):   
TTTGGGCCACCAAGTGGACCGCCTTCGCCT
Done.