Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37330

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3864
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:1693 original size:22 final size:23

Alignment explanation


    Indices: 1654--1698  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 23

       1644 AAAGCTCAGG

                        **    *    
       1654 AGAAAGGAGAGACTGAAAGGAAA
          1 AGAAAGGAGAGAAAGAAAAGAAA

                                   
       1677 AGAAA-GAGAGAAAGAAAAGAAA
          1 AGAAAGGAGAGAAAGAAAAGAAA

       1699 TGTGCTGAAA


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  22   14  0.74
  23    5  0.26

ACGTcount: A:0.64, C:0.02, G:0.31, T:0.02


Consensus pattern (23 bp):   
AGAAAGGAGAGAAAGAAAAGAAA
Done.