Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24833

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 583

Length: 972
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29


Found at i:93 original size:6 final size:6

Alignment explanation


    Indices: 82--106  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

         72 CACCACCCGT

                                         
         82 CCTCCA CCTCCA CCTCCA CCTCCA C
          1 CCTCCA CCTCCA CCTCCA CCTCCA C

        107 TCCGCCTAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16


Consensus pattern (6 bp):   
CCTCCA

Done.