Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07588

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 421

Length: 702
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25


Found at i:416 original size:12 final size:12

Alignment explanation


    Indices: 399--428  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        389 ATGATGAACT

                        
        399 GGGTTTGCCACC
          1 GGGTTTGCCACC

                        
        411 GGGTTTGCCACC
          1 GGGTTTGCCACC

             *    
        423 GAGTTT
          1 GGGTTT

        429 ACCGTCGGTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.10, C:0.27, G:0.33, T:0.30


Consensus pattern (12 bp):   
GGGTTTGCCACC
Done.