Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29417

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1899
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27


Found at i:411 original size:12 final size:12

Alignment explanation


    Indices: 385--425  Score: 55
    Period size: 12  Copynumber: 3.4  Consensus size: 12

        375 TGAAGAAAAC

                   *  * 
        385 GATGATGGTGAT
          1 GATGATGATGTT

                        
        397 GATGATGATGTT
          1 GATGATGATGTT

                *       
        409 GATGTTGATGTT
          1 GATGATGATGTT

                 
        421 GATGA
          1 GATGA

        426 AGAAGAAGAA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39


Consensus pattern (12 bp):   
GATGATGATGTT
Done.