Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12981

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2438
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:2267 original size:15 final size:15

Alignment explanation


    Indices: 2247--2278  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2237 CCTTTTGTCT

                           
       2247 GACATGCAAGTAACA
          1 GACATGCAAGTAACA

                       *   
       2262 GACATGCAAGTCACA
          1 GACATGCAAGTAACA

              
       2277 GA
          1 GA

       2279 TACTGCTGCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12


Consensus pattern (15 bp):   
GACATGCAAGTAACA
Done.