Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25014

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 313

Length: 522
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29


Found at i:88 original size:3 final size:3

Alignment explanation


    Indices: 80--109  Score: 60
    Period size: 3  Copynumber: 10.0  Consensus size: 3

         70 ATCTTGAAAA

                                                   
         80 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT

        110 GTTATTTACC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
CTT

Done.