Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16105

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1275
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21


Found at i:856 original size:3 final size:3

Alignment explanation


    Indices: 796--838  Score: 59
    Period size: 3  Copynumber: 14.3  Consensus size: 3

        786 TGGTGATGAT

                 *            *       *                              
        796 GAA GGA GAA GAA GAC GAA GAG GAA GAA GAA GAA GAA GAA GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G

        839 TGAAGCCCAA


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.58, C:0.02, G:0.40, T:0.00


Consensus pattern (3 bp):   
GAA
Done.