Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06330

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 523

Length: 873
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27


Found at i:665 original size:21 final size:21

Alignment explanation


    Indices: 633--672  Score: 64
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        623 AAGCAGCGGC

                                 
        633 GGAGAGGATGAGGGTGTTGGG
          1 GGAGAGGATGAGGGTGTTGGG

                                
        654 GGAGATGG-TGAGGGTGTTG
          1 GGAGA-GGATGAGGGTGTTG

        673 AAGCCCGGTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  21   16  0.89
  22    2  0.11

ACGTcount: A:0.17, C:0.00, G:0.60, T:0.23


Consensus pattern (21 bp):   
GGAGAGGATGAGGGTGTTGGG
Done.