Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06518

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:436 original size:36 final size:36

Alignment explanation


    Indices: 389--460  Score: 144
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        379 AGTTGTTCTG

                                                
        389 CCGGATCGGTCGCACAAGACCTTTGGTCTCTACCCA
          1 CCGGATCGGTCGCACAAGACCTTTGGTCTCTACCCA

                                                
        425 CCGGATCGGTCGCACAAGACCTTTGGTCTCTACCCA
          1 CCGGATCGGTCGCACAAGACCTTTGGTCTCTACCCA

        461 GACCTGATAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   36  1.00

ACGTcount: A:0.19, C:0.36, G:0.22, T:0.22


Consensus pattern (36 bp):   
CCGGATCGGTCGCACAAGACCTTTGGTCTCTACCCA
Done.