Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40026

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 279
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21


Found at i:41 original size:24 final size:26

Alignment explanation


    Indices: 13--65  Score: 74
    Period size: 27  Copynumber: 2.1  Consensus size: 26

          3 GTCTAGCAAG

                                      
         13 AGATCAAGTGG-A-AGAAGCAACGAA
          1 AGATCAAGTGGCACAGAAGCAACGAA

                                   *   
         37 AGATCAAGTGGCAGCAGAAGCAATGAA
          1 AGATCAAGTGGCA-CAGAAGCAACGAA

              
         64 AG
          1 AG

         66 CGAAGATTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  24   11  0.44
  25    1  0.04
  27   13  0.52

ACGTcount: A:0.47, C:0.13, G:0.30, T:0.09


Consensus pattern (26 bp):   
AGATCAAGTGGCACAGAAGCAACGAA

Done.