Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10987

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2139
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27


Found at i:69 original size:9 final size:9

Alignment explanation


    Indices: 55--85  Score: 53
    Period size: 9  Copynumber: 3.4  Consensus size: 9

         45 TGATCTTCAG

                   * 
         55 CCTCCTCCT
          1 CCTCCTCAT

                     
         64 CCTCCTCAT
          1 CCTCCTCAT

                     
         73 CCTCCTCAT
          1 CCTCCTCAT

                
         82 CCTC
          1 CCTC

         86 AACCAGTTGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.06, C:0.61, G:0.00, T:0.32


Consensus pattern (9 bp):   
CCTCCTCAT
Done.